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Cytogenetics: Fluorescence In Situ Hybridization (Fish) and Chromosome Analysis


Definition and Use


  • FISH
    • Analysis of fetal tissue to detect targeted numeric or structural chromosome aberrations.
    • Interphase FISH performed on uncultured cells is used to provide a rapid (1 day) result for targeted chromosome enumeration. Typically, chromosomes 13, 18, 21, X, and Y are assessed. Metaphase FISH performed on cultured cells is used to assess chromosome aberrations too small to be detected by conventional chromosome analysis.
    • Generally used only in cases with specific risk (specific ultrasound anomalies, family history).
  • Chromosome analysis
    • Analysis of fetal tissue to detect numeric and structural chromosome aberrations. Most chromosome aberrations are numeric (e.g., trisomies 13, 18, 21 [Down syndrome], 45,X [Turner syndrome], 47,XXY [Klinefelter syndrome]).
    • Principle indications:
      • Increased risk determined from maternal screening
      • Ultrasound anomaly
      • Family history of chromosome anomaly (previous affect pregnancy, balanced rearrangement carrier parent)
      • Fetal sexing for history of X-linked disorders

Limitations


  • FISH
    • Targeted test that assesses only specific region on chromosome; does not ensure that entire chromosome is normal and does not assess every chromosome.
    • Mosaicism may also confound results.
  • Chromosome analysis
    • Analysis cannot detect aberrations smaller than 5 " “10 megabases; requires cell culture to obtain actively dividing metaphase cells.
    • Mosaicism, the presence of two cell lines, may be difficult to interpret, because chromosome anomalies can arise in vitro during specimen culture.
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